RnoEX6015307 @ rn6
Exon Skipping
Gene
ENSRNOG00000054251 | Clec7a
Description
C-type lectin domain containing 7A [Source:RGD Symbol;Acc:1565140]
Coordinates
chr4:163216163-163222792:-
Coord C1 exon
chr4:163222641-163222792
Coord A exon
chr4:163220695-163220813
Coord C2 exon
chr4:163216163-163217939
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTATTTTTGTTTTACTACAGGAG
3' ss Score
8.59
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
GCGTCTTTTCTGGACCTTGCCTTCCCAATTGGATCATGCATGCCAAGAGCTGTTATCTATTTAGCTTCTCAGAAAATTCCTGGTATGGAAGTAGGAGACACTGTTCCCAGCTAGGAGCTCATCTATTGAAGATAGACAATGCAAAAGAATTT
Seq A exon
GAGTTCATTGAAAGCCAAACATCTTCTCACCGTGTTAACTCATTCTGGATAGGTCTATCTCGCAATCAGAGTGAAGGGCCGTGGTTCTGGGAGGATGGATCAGCATTTACCCCCAACTC
Seq C2 exon
GTTTCAAGTCAGAAATACAGCTCCCCAAGAAAGCTTACCCCACAATTGTGTTTGGATCCATGGGTCAGAGGTCTACAACCAAATGTGCATTGCTTCCTCATTCACTATCTGTGAGAAGGAACTGTAAAATGTAATGTATGTGAGAGTGTAAAGGTGGAATGCGTGTGTGTGTGCATGCACACACACACCCACACACATCACCACCACCATAACCACCAACACAACCAATAACAACAACAACAATAAAACAACACAACAACAACAGCAACAACAAAACAGAACAGAACAGAACAGGAAAGATGAATATTGAAAATCAGAGAAAACGCTGAAATGCTAAGAGACTTTAACCTCAGCTGAGAACTTGGATGCAGAAGCTAAGACTTCTGCACTTGCCAGCTTCATAAAGAAGGCAGCGCTATCTTCCAGTTAGTAAGCCACTAGATGTGAAATGAAGGCAGCTCAGAAATAGGGAATATGTGAACATGAGGTATCCTAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054251-'5-9,'5-5,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.018
Domain overlap (PFAM):
C1:
PF083915=Ly49=PD(6.5=3.9),PF0005916=Lectin_C=PU(25.2=52.9)
A:
PF0005916=Lectin_C=FE(36.4=100)
C2:
PF0005916=Lectin_C=PD(36.4=90.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGTTCCCAGCTAGGAGC
R:
TGATGTGTGTGGGTGTGTGTG
Band lengths:
255-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]