MmuEX6007362 @ mm9
Exon Skipping
Gene
ENSMUSG00000079293 | Clec7a
Description
C-type lectin domain family 7, member a [Source:MGI Symbol;Acc:MGI:1861431]
Coordinates
chr6:129411611-129417686:-
Coord C1 exon
chr6:129417535-129417686
Coord A exon
chr6:129415473-129415591
Coord C2 exon
chr6:129411611-129413185
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTATTTTTGTTTTACTACAGGAG
3' ss Score
8.59
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
GAGGTTTTTCTCAGCCTTGCCTTCCTAATTGGATCATGCATGGGAAGAGCTGTTACCTATTTAGCTTCTCAGGAAATTCCTGGTATGGAAGTAAGAGACACTGCTCCCAGCTAGGTGCTCATCTACTGAAGATAGACAACTCAAAAGAATTT
Seq A exon
GAGTTCATTGAAAGCCAAACATCGTCTCACCGTATTAATGCATTTTGGATAGGCCTTTCCCGCAATCAGAGTGAAGGGCCATGGTTCTGGGAGGATGGATCAGCATTCTTCCCCAACTC
Seq C2 exon
GTTTCAAGTCAGAAATACAGCTCCCCAGGAAAGCTTACTGCACAATTGTGTATGGATTCATGGATCAGAGGTCTACAACCAAATCTGCAATACTTCTTCATACAGTATCTGTGAGAAGGAACTGTAAATGTATGTGAGAATATAAAGATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGCACACACACCACCACCACCACCACTACCAACAACAGAACAGAACAGAACAGAACAGAACAGATTAATATTAAAAAACAGAAAAAATGCTGGGATGCTAAGAGACTTTAACCTCATTTGAGAACTTGGATGAAGAAGCTGAGACTTTTGTACTTGTCATCTTCACAAAGATGGTGGCACTATCTTCCAGTTAGGAAGTCACTAGACATGGAGTGAGGGCAGCTCAACAATACAGAGAATATGTGAACCTGAGGTACCCTGACTCAAATTTCACAACCACAATGAAACCCCTACACTATCAGGAAACACTGTAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079293-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(25.2=52.9)
A:
PF0005916=Lectin_C=FE(36.4=100)
C2:
PF0005916=Lectin_C=PD(36.4=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACACTGCTCCCAGCTAG
R:
GGTGGTGTGTGTGCATGTACA
Band lengths:
255-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: