BtaEX0009212 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014546 | CLEC7A
Description
C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:HGNC:14558]
Coordinates
chr5:100285880-100295523:+
Coord C1 exon
chr5:100285880-100286031
Coord A exon
chr5:100290251-100290369
Coord C2 exon
chr5:100294657-100295523
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTATTTATGTTTCCTTACAGGAG
3' ss Score
10.91
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAGTTTTCTCTAGCTCTTGTCCCCCTAACTGGATCACACATGAGGATAGCTGTTATCTATTTAGCACACTATTAGATTCCTGGGATGGAAGTAAAAGACAATGCTTTCAACTGGGCTCCCATCTCCTGAAGATAGACAGCTCAAAAGAGTTG
Seq A exon
GAGTTTATATCAAGGCAAGTGTCTTCCCAGCCTGATCATTCATTTTGGATAGGGCTTTCTCGCCGTCAGACAGAAGAACCATGGCTCTGGGAGGATAGCTCCACCTTGTTGTCTAACCT
Seq C2 exon
GTTCCAAATCAGAAGTACAGTTACCGAAAAAGACTCATCTCACAACTGTGCATGGATCCATGTGTCAGACATTTACGACCAACTTTGTAGTGTGCATTCATACAGTATTTGTGAGAAGAAGTTGTCAGTATAATGGTGAGGAGCAGAGAGATGTATGTAAGATACTAAGGAGGGTATAAACCCAAACAGAAAAGAGACATATTTGAGGTCAAAATAATTGCTGAAAAAAATATCAAGAGAGCTCAGCCAACTTCAATCTTAACTGAGAAACAGGATGGAAGACTTCGATTTCCATACTCCCCAAGTCTATCCGGTAATCAGTATTGTGTTCTAATTATTAGAGTCCTAGAAATGGAGTCAGAACACCTGACCTTGAATTTTCATTCTATCAATGGTAGAATTTTCATTCTGCCATTCTATTTACCTGGATTAGCTGTGGATTCTTGGTGTTTCAGGAGATCTTAATTTCTGACTATACCAGAGTTGTATTTTGTCCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014546-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=PD(14.7=9.8),PF0005916=Lectin_C=PU(25.2=52.9)
A:
PF0005916=Lectin_C=FE(36.4=100)
C2:
PF0005916=Lectin_C=PD(36.4=86.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTAGCTCTTGTCCCCCT
R:
TGCACACTACAAAGTTGGTCGT
Band lengths:
243-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development