RnoEX6015785 @ rn6
Exon Skipping
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2291722-2292584:+
Coord C1 exon
chr3:2291722-2291881
Coord A exon
chr3:2291994-2292221
Coord C2 exon
chr3:2292321-2292584
Length
228 bp
Sequences
Splice sites
3' ss Seq
AGCACTTCCTCTGTGGTCAGTAT
3' ss Score
4.17
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
CCAGAAGAACAGCTCTCAGGCTCAAGACATCCTAGCTGCAGTCTCCCAGACACTGAGCAGGGCTCCGGTGGACTTTTGGGGAGCCAGGATCCTGGCTGGGCAGGATGAAGGTGCCTTTGGTTGGATCACTGTCAACTACGTCCTGGGAATGCTCCTGAAG
Seq A exon
TATTCGTCTGGACAATGGATCCTGCCTGAAGATGGGACGCTAGTTGGTGCTCTGGACCTTGGCGGGGCCTCCACGCAGATCAGCTTTGTGCCTCAGGGCCCCATCCTGGACCAGAGCACCCAGGTTACCTTCCGCCTGTACGGCGCCAATTACAGTGTCTACACTCACAGCTACCTCTGCTTTGGGCGGGACCAGATCCTAAGAAGGCTCCTGGCTGAACTGGTACAG
Seq C2 exon
AGCAGCCAGGTAGCCCGGGTCAGACACCCATGCTACCACAGTGGCTACCAGGCCACACTGTCACTGGCTTCCTTGTATGATTCACCCTGCGTCCACACTCCAGATTCCCTGAACTACACCCAGAACCTCACAGTTGAAGGGATAGGCAACCCTGGGAACTGTGTGGCAGCCCTCCGGGGTCTCTTCAACTTCTCCAGCTGTAAGGGCCAAGAGGATTGTGCTTTCAATGGAGTCTACCAGCCTCCCGTGCATGGCCAGTTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.4=100)
A:
PF0115012=GDA1_CD39=FE(17.5=100)
C2:
PF0115012=GDA1_CD39=FE(20.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTAGCTGCAGTCTCCCAG
R:
ACAGTTCCCAGGGTTGCCTAT
Band lengths:
294-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]