HsaEX6064299 @ hg38
Exon Skipping
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
Coordinates
chr9:137436521-137437028:-
Coord C1 exon
chr9:137436869-137437028
Coord A exon
chr9:137436707-137436751
Coord C2 exon
chr9:137436521-137436593
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTGGCCCCTTCTGTGCCCAGTAC
3' ss Score
6.66
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
CCGGAAGAACAGCTCTCAGGCCAGGGACATCTTTGCAGCAGTCACCCAGGTCCTGGGCCGGTCTCCCGTGGACTTTTGGGGTGCCGAGCTCCTGGCCGGGCAGGCCGAAGGTGCCTTTGGTTGGATCACTGTCAACTACGGCTTGGGGACGCTGGTCAAG
Seq A exon
TACTCCTTCACTGGAGAATGGATCCAGCCTCCGGAGGAGATGCTG
Seq C2 exon
CGTCTACACTCACAGCTACCTGTGCTTTGGACGGGACCAGATGCTGAGCAGGCTCCTCGTGGGGCTGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.070 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(16.4=100)
A:
PF0115012=GDA1_CD39=FE(23.5=100)
C2:
PF0115012=GDA1_CD39=FE(23.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCCGTGGACTTTTGGG
R:
GTCCAAAGCACAGGTAGCTGT
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains