DreEX0030109 @ danRer10
Exon Skipping
Gene
ENSDARG00000005565 | entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:ZFIN;Acc:ZDB-GENE-040724-142]
Coordinates
chr6:41050478-41055266:+
Coord C1 exon
chr6:41050478-41050637
Coord A exon
chr6:41054645-41054875
Coord C2 exon
chr6:41055000-41055266
Length
231 bp
Sequences
Splice sites
3' ss Seq
TTAATGGCTTTTTCCTGTAGCAC
3' ss Score
7.99
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CTTACAGAACCAAACTCAATCAGACAGCATCCTTGCAGAGGTCGCCAAAACAATTCAAACTTACCCATTTGATTTCCGAGGAGCCAGAATACTCACAGGGATGGAGGAGGGAGCTTATGGCTGGATCACCACCAACTACCTCTTGGAGAGCTTTATTAAG
Seq A exon
CACACATTTGAGGGCTCCTGGATCCACCCTAAAGCCGGAAAGATCATTGGAGCTCTCGATCTCGGTGGTGCATCAACACAGATCTCCTTTACCCCAAAAGACCCAGTCAGAGACCCAAATTCAGCATTTAATCTCCAACTTTATGGGTATAAATATGAGTTGTACACTTACAGCTACTTGTGTTACGGCAAAGACCAGGCTTTGAAGAAACTCCAAGCCTACCTTCACAAG
Seq C2 exon
AATGCGGGATCATCATCATCTATCAGTCACCCCTGCTACCACAAAGGATATAATCTCAATCTTACTCTGGCTGAACTTTACAACTCCCCTTGTGTGGTCCCACCAAGCAGTTTCAACCCCAAGGATACAATCCTTTTTAAGGGAACAGGAAATTCATCCCTTTGCCTATCTCTAATAGAAAACATTGTTAATCTCACTGGTTGTGCATTATCCCCTGACTGTGGCTTCAATGGCATCTATCAGCCTCCAGTCAACGGCGAATTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005565_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PD(36.9=93.5)
A:
PF0115012=GDA1_CD39=FE(17.7=100)
C2:
PF0115012=GDA1_CD39=FE(20.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGGATCACCACCAACTA
R:
AGAATTCGCCGTTGACTGGAG
Band lengths:
308-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]