GgaEX0027575 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV60]
Coordinates
chr17:928539-930928:+
Coord C1 exon
chr17:928539-928698
Coord A exon
chr17:928998-929231
Coord C2 exon
chr17:930818-930928
Length
234 bp
Sequences
Splice sites
3' ss Seq
TAATTCTCTGTGTGGGGCAGTAC
3' ss Score
3.52
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGAGCAGAACAGCACAAAAGCTGAGCAGGTCTTTGCTGAGGTCAGCAAGGCCATTCGTGAGTTCCCTGTGGACTTCCGCGGAGCTCAGATCCTCACCGGGAATGAGGAGGGCTCCTTCGGCTGGATCACCATCAACTACCTGCTGGAGACACTTATCAAG
Seq A exon
TACTCCTTCACAGGCAAGTGGACCCACCCACCAGTAGAGAACGTTGTCGGAGCTCTGGACCTTGGTGGGGCTTCAACCCAGATCACATTTCTTCCTGGGACCACAACTGATGACAAGAACACAACAAGAGCCCTCCTCAGACTGTATGGGACCGACTATTCAGTTTACACCCACAGCTACCTCTGCTATGGAGAAAAGGAAGTCCTGAAGAGGCTCTTGGCATCTTTACACAAG
Seq C2 exon
GCTTTTTCAGCATTTTATTACAACCTCCACTTCCTGAACCTGACTGAAGAGCAGTCCCTGAGTTCCGTCAATGACACTGTCTGGAAATTCTGCTCCAGAAGTTGGATGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008936_MULTIEX1-3/4=2-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.3=100)
A:
PF0115012=GDA1_CD39=FE(17.9=100)
C2:
PF0115012=GDA1_CD39=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGAACAGCACAAAAGC
R:
TTCTGGAGCAGAATTTCCAGACA
Band lengths:
260-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]