MmuEX6099405 @ mm9
Exon Skipping
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:24938740-24939608:+
Coord C1 exon
chr2:24938740-24938899
Coord A exon
chr2:24939018-24939254
Coord C2 exon
chr2:24939345-24939608
Length
237 bp
Sequences
Splice sites
3' ss Seq
AGCACTTCATCTGTGGTCAGTAT
3' ss Score
2.31
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
CCAGAAGAACAGCTCTCAGGCAAGAGACATCCTAGCTGCAGTCTCCCAGACACTAAGCAAGTCTCCTGTGGATTTTTGGGGTGCTAAGATCTTGGCTGGGCAGGATGAAGGTGCCTTTGGTTGGATCACCATCAACTATGTCCTGGGAATGCTCCTGAAG
Seq A exon
TATTCCTCTGGACAGTGGATCCTGCCTGAAGAGGGGATGCTAGTTGGTGCTCTGGACCTTGGTGGAGCCTCCACGCAGATCAGCTTCGTGCCTCAGGGCCCCATCCTGGACCAGAGCACCCAAGTCACCTTCCGCCTGTACGGTGCCAACTACAGTGTCTACACTCACAGCTACCTCTGCTTTGGGCGGGACCAGATCCTGAACAGGCTCCTGGCTAAGCTGGCACAGGACAGGTTG
Seq C2 exon
AGCAGCCAGGTGGCCCCGGTCAGACACCCATGCTACCACAGTGGCTACCAGGCCATACTGCCACTGAGTTCCTTGTATGACTCACCCTGCATCCACACTACAGATTCCCTGAACCACACCCAGAACCTCACAGTTGAAGGGACAGGCGACCCTGGGAACTGTGTGGTAGCTCTCCGAAGTCTCTTCAACTTCTCCAGCTGTAAGGGCCAGAAGGATTGTGCTTTCAATGGCATCTACCAGCCTCCTGTGCACGGCCAGTTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813-'6-10,'6-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.3=100)
A:
PF0115012=GDA1_CD39=FE(18.1=100)
C2:
PF0115012=GDA1_CD39=FE(20.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAGATCTTGGCTGGGCAG
R:
ATCCTTCTGGCCCTTACAGCT
Band lengths:
294-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: