BtaEX0012934 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030246 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
Coordinates
chr11:105700500-105701314:+
Coord C1 exon
chr11:105700500-105700659
Coord A exon
chr11:105700751-105700981
Coord C2 exon
chr11:105701054-105701314
Length
231 bp
Sequences
Splice sites
3' ss Seq
GTGCCCCCGTCCGTGCCCAGTAC
3' ss Score
7.23
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CCGCAAGAATCGCTCCCAGGCGGAGGACGTGTTCGCCGCGGTCAGCCGGGCCCTGGGCCAGTCACCGGTGGACTTCCGGGGCGCAGAGCTCCTGACGGGGCAGGACGAAGGCGCCTTTGGTTGGATCACCATCAACTACATCCTTGGCCTGCTGGTGAAG
Seq A exon
TACTCCTTCTCTGGAGAGTGGATCCGGCCCCTGGAGGAGACGCTGGTGGGCGCCCTGGACATGGGTGGGGCCTCCACCCAGATTACCTTTGTACCTGGAGGCCCCATCCTGGACAAGACCGCCCAGGCCACCTTCCGCCTCTACGGTGCCGACCACACCGTCTACACCCACAGCTACCTCTGCTTCGGGCGCGACCAGGCGCTGAGCAGGGTGCTGGCCGAGCTGGTGCAG
Seq C2 exon
GCCAGCACGGGCCTCCTGATCCGCCACCCCTGCTACCACAGCGGCTACCGGGGCACGCTGGCCCTGGCGTCCCTGTATGAGTCGCCCTGCGCCCCGGCAGCGCCCCCCGACCTCAGCCAGAACCTCACCGTGGAGGGCACGGGGAACCCCGGGGCCTGCGTCGAGGCCCTCCGGAAGCTCTTCAATTTCTCCAGCTGTGACGGCCGAGAAGACTGTGCCTTCGCCGGGGTCTACCAGCCCCCCGTGCAGGGCCAGTTCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030246_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.4=100)
A:
PF0115012=GDA1_CD39=FE(17.8=100)
C2:
PF0115012=GDA1_CD39=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCACCGGTGGACTTCC
R:
GCCGTCACAGCTGGAGAAATT
Band lengths:
307-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development