RnoEX6016057 @ rn6
Exon Skipping
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5535795-5538209:+
Coord C1 exon
chr3:5535795-5535957
Coord A exon
chr3:5537131-5537235
Coord C2 exon
chr3:5538058-5538209
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCGTTTCCATCTCTCTTAGGAT
3' ss Score
9.83
5' ss Seq
AAGGTTGGA
5' ss Score
5.64
Exon sequences
Seq C1 exon
CACAGGGCAAATGCACTGCCTCTGGGACCCGCCCGGGCTGCAGTCAGGACTCACATGGCACCAGCTGGTGGCACAGCCTGGCCTCTTCTACAGTGCAGATGACCAGTGCCGTGTGGCTTTCGGCGCCGGGGCTGTCGCCTGCACCTTCTCCAGGGAGGGTCTG
Seq A exon
GATGTATGCCAGGCTCTGTCCTGTCACACAGACCCCCTGGACCAAAGCAGCTGCAGCCGCCTCCTTGTTCCTCTCCTGGACGGGACAGAATGTGGTGTAGAGAAG
Seq C2 exon
TGGTGCTCTAAGGCTCGCTGTCGCTCCCTAGCTGAGCTGGCTCCTGTGGCTGTGGTACATGGACACTGGTCTAGCTGGGGCCCCCACAGTCCTTGCTCTCGATCCTGTGGAGGAGGTGTGATCACCAGGAGACGGTGGTGCAACAACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780-'10-10,'10-9,11-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PD(5.3=20.0)
A:
NO
C2:
PF0009014=TSP_1=PU(52.9=52.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAGGACTCACATGGCAC
R:
TGATCACACCTCCTCCACAGG
Band lengths:
247-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]