GgaEX7009815 @ galGal4
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6911404-6912893:+
Coord C1 exon
chr17:6911404-6911554
Coord A exon
chr17:6912209-6912313
Coord C2 exon
chr17:6912742-6912893
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTATTTCTCGTCACACCAGGAT
3' ss Score
7.24
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CACAGGCCAAACAAACTGCTTAAATGACCTGCCGGACATGGACGGCAGCATCCCTGGATGGAAGCCTGGCTTGTACTATGGAGCAGATGAGCAATGTAAAATAGCCTTTGGGAGCGTTGCAACTGCGTGCACCTTTGCTGACAGCAATGTT
Seq A exon
GATATATGTAAAGTTCTCTCATGCCATGTACAACCAGGAGACAAATCCAGCTGTACTCGGCTTCTTGTTCCCCTCTTAGATGGTACTGAGTGTGGCGTCAATAAG
Seq C2 exon
TGGTGCTCCAAGGGACAGTGCAGCTCTCTGACAGAACTAAACCCCATGGCTGTAGTCCATGGGCAGTGGTCCAGCTGGAGCCCATTTTCCTCCTGCTCCCGCAGCTGTGGAGGTGGAGTTCAGATAAGGCAGCGGTTCTGTAATAACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028-'9-13,'9-12,12-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PD(5.3=21.6)
A:
NO
C2:
PF0009014=TSP_1=PU(52.9=52.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTAAATGACCTGCCGGACA
R:
TCTGAACTCCACCTCCACAGC
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]