MmuEX6099811 @ mm10
Exon Skipping
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26981663-26983999:+
Coord C1 exon
chr2:26981663-26981825
Coord A exon
chr2:26983024-26983128
Coord C2 exon
chr2:26983848-26983999
Length
105 bp
Sequences
Splice sites
3' ss Seq
CACTTGTGCATCTCTCTTAGGAT
3' ss Score
8.23
5' ss Seq
AAGGTTGGA
5' ss Score
5.64
Exon sequences
Seq C1 exon
CACAGGGCAAATGCACTGCTTCCAGGACCCACCTGGGCTGCAGTCAGGACTTACACGGCACCAGCTGATGGCACAGCCTGGCCTCTACTACAGTGCAGATGATCAGTGCCGTGTGGCTTTCGGTTCTGGGGCTGTCGCCTGCACCTTCTCCAGGGAGGGTCTG
Seq A exon
GATGTATGCCAGGCCCTGTCCTGCCACACAGACCCCTTGGACCAAAGCAGCTGCAGCCGCCTCCTTGTTCCTCTCCTGGATGGGACAGAATGTGGTGTGGAGAAG
Seq C2 exon
TGGTGCTCCAAGGCTCGCTGTCGCTCCCTAGCTGAGCTGGCTCCTGTGGCTGCAGTACATGGACACTGGTCTAGCTGGGGCCCCCATAGTCCCTGCTCCCGATCCTGTGGAGGAGGTGTGATTACCAGGAGGCGGTGGTGCAACAACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-'1-20,'1-9,9-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PD(5.3=20.0)
A:
NO
C2:
PF0009014=TSP_1=PU(52.9=52.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAGGACTTACACGGCAC
R:
CGCCTCCTGGTAATCACACCT
Band lengths:
257-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types