BtaEX6047321 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104385626-104387604:+
Coord C1 exon
chr11:104385626-104385788
Coord A exon
chr11:104386558-104386662
Coord C2 exon
chr11:104387453-104387604
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCATCTGTCCCCCCTCTTAGGAC
3' ss Score
11.32
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CGCAGGACGGGCGCGCTGCTTGTGGGACCCTCCGGGGCCGCTGTCCGGGCCCGCGGGGCAGCCTCCCGAGGTGCAGCCCGGCCTCTACTACGGCGCAGACGAGCAGTGCCGCGTCGCCTTCGGCCCCACGGCGGTCGCCTGCACCTTCCGCGGGGAGCACCTG
Seq A exon
GACATGTGCCAGGCTCTCTCCTGCCACACAGACCCCCTGGACCCAAGCAGCTGTAGCCGCCTGCTTATTCCTCTCCTGGATGGGACAGAGTGTGGCGTGGGGAAG
Seq C2 exon
TGGTGCTCCAAGGGTCACTGCCGCTCGCTGGCGGAGCTGGCCCCCGTGGGGGTGGTGCACGGGCACTGGTCTGGCTGGGGGCCCGCCAGTCCTTGCTCCCGCTCCTGCGGAGGCGGCGTGATTACCAGGAGACGGCGGTGCAACAACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PD(5.3=20.0)
A:
NO
C2:
PF0009014=TSP_1=PU(52.9=52.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCGGCCTCTACTACG
R:
CTGGGGTTGTTGCACCGC
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]