RnoEX6017436 @ rn6
Exon Skipping
Gene
ENSRNOG00000018286 | Chrna1
Description
cholinergic receptor nicotinic alpha 1 subunit [Source:RGD Symbol;Acc:69277]
Coordinates
chr3:60453144-60454722:-
Coord C1 exon
chr3:60454577-60454722
Coord A exon
chr3:60454398-60454442
Coord C2 exon
chr3:60453144-60453253
Length
45 bp
Sequences
Splice sites
3' ss Seq
GGGACCTTCTCTCTTCCCAGGAT
3' ss Score
8.82
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTGGCACTGTTCTGGGCTCCGAACATGAGACTCGTCTGGTGGCAAAGCTCTTTAAAGACTACAGCAGTGTGGTCCGGCCAGTAGGGGACCACCGTGAGATTGTACAGGTCACTGTGGGACTGCAACTGATCCAGCTTATCAACGTG
Seq A exon
GATGAAGTAAATCAGATTGTGACAACCAACGTTCGTCTGAAACAG
Seq C2 exon
CAATGGGTTGATTACAACTTGAAATGGAATCCAGATGACTATGGAGGAGTGAAAAAAATTCACATCCCCTCGGAAAAGATCTGGCGGCCGGACGTTGTTCTCTATAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018286-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=79.6)
A:
PF0293118=Neur_chan_LBD=FE(6.7=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCACCGTGAGATTGTAC
R:
GCCAGATCTTTTCCGAGGGGA
Band lengths:
147-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]