GgaEX1015435 @ galGal4
Exon Skipping
Gene
ENSGALG00000009301 | CHRNA1
Description
Acetylcholine receptor subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P09479]
Coordinates
chr7:16305970-16306771:+
Coord C1 exon
chr7:16305970-16306115
Coord A exon
chr7:16306234-16306278
Coord C2 exon
chr7:16306662-16306771
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTTCCTTTCAAGGAT
3' ss Score
11.18
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CCGGGCCGGCCCTGTGCTACGAGCACGAGACGCGCCTGGTCGATGACCTGTTCCGGGAATACAGCAAGGTGGTGCGCCCCGTGGAGAATCACCGCGATGCCGTCGTCGTCACCGTCGGGCTGCAGCTCATTCAGCTCATCAATGTG
Seq A exon
GATGAAGTAAATCAGATTGTAACAACCAATGTGCGCCTGAAGCAG
Seq C2 exon
CAATGGACAGACATAAACCTGAAGTGGAACCCAGATGACTACGGTGGCGTGAAACAAATCCGCATCCCATCAGATGACATCTGGCGCCCAGATCTTGTCCTTTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009301_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=79.6)
A:
PF0293118=Neur_chan_LBD=FE(6.7=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTTCCGGGAATACAGC
R:
ACCGTAGTCATCTGGGTTCCA
Band lengths:
147-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]