MmuEX6102203 @ mm10
Exon Skipping
Gene
ENSMUSG00000027107 | Chrna1
Description
cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) [Source:MGI Symbol;Acc:MGI:87885]
Coordinates
chr2:73573260-73574631:-
Coord C1 exon
chr2:73574486-73574631
Coord A exon
chr2:73574321-73574365
Coord C2 exon
chr2:73573260-73573369
Length
45 bp
Sequences
Splice sites
3' ss Seq
GGGATCTTCTCTCTTCTTAGGAT
3' ss Score
9.5
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTGGCCTTGTTCTGGGCTCCGAACATGAGACGCGTCTGGTGGCAAAGCTCTTTGAAGACTACAGCAGTGTAGTCCGGCCAGTGGAGGACCACCGTGAGATTGTACAAGTCACCGTGGGTCTACAGCTGATCCAGCTTATCAATGTG
Seq A exon
GATGAAGTAAATCAGATTGTGACAACCAATGTACGTCTGAAACAG
Seq C2 exon
CAATGGGTCGATTACAACTTGAAATGGAATCCAGATGACTATGGAGGAGTGAAAAAAATTCACATCCCCTCGGAAAAGATCTGGCGGCCGGACGTCGTTCTCTATAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027107-'2-3,'2-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=79.6)
A:
PF0293118=Neur_chan_LBD=FE(6.7=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGGTCTACAGCTGATCCA
R:
TATAGAGAACGACGTCCGGCC
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types