BtaEX6008956 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018253 | CHRNA1
Description
Bos taurus cholinergic receptor, nicotinic, alpha 1 (muscle) (CHRNA1), mRNA. [Source:RefSeq mRNA;Acc:NM_176664]
Coordinates
chr2:22125312-22126731:+
Coord C1 exon
chr2:22125312-22125457
Coord A exon
chr2:22125568-22125612
Coord C2 exon
chr2:22126622-22126731
Length
45 bp
Sequences
Splice sites
3' ss Seq
GGGCCTTATCTTTTTTTCAGGAT
3' ss Score
9.83
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CTGGCCTCGTCCTGGGCTCCGAACATGAGACTCGTCTGGTGGCAAAGCTCTTTGAAGACTACAACAGCGTGGTACGGCCCGTGGAAGACCACCGCCAGGCCGTGGAGGTCACGGTGGGCCTGCAGCTGATACAGCTCATCAACGTG
Seq A exon
GATGAAGTAAATCAGATCGTGACAACCAATGTTCGTCTGAAACAG
Seq C2 exon
CAATGGGTGGATTACAACTTAAAATGGAATCCAGATGACTATGGTGGCGTGAAAAAAATTCACATTCCTTCGGAAAAGATCTGGCGCCCAGACCTCGTTCTTTATAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018253-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=79.6)
A:
PF0293118=Neur_chan_LBD=FE(6.7=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTACAACAGCGTGGTACGG
R:
ACGCCACCATAGTCATCTGGA
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]