RnoEX6017862 @ rn6
Exon Skipping
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80848278-80849255:-
Coord C1 exon
chr3:80849144-80849255
Coord A exon
chr3:80848640-80848839
Coord C2 exon
chr3:80848278-80848378
Length
200 bp
Sequences
Splice sites
3' ss Seq
TGAGCACCCTGTGCCCACAGGCC
3' ss Score
8.47
5' ss Seq
CGAGTAGGT
5' ss Score
5.76
Exon sequences
Seq C1 exon
GTACTGTGCAGGCACCATGCCCTGGGGCCACCCTGGGGAGCACCATGACTTCGAGCCCCAGAGGCACGATGATGGCTACCTCGAGGTCATCGGCTTCACCATGACATCCTTG
Seq A exon
GCCGCATTGCAGGTGGGTGGACACGGCGAGCGGCTGACCCAGTGCCGAGAAGTGCTGCTCACCACTGCCAAGGCCATCCCTGTGCAGGTGGATGGTGAACCCTGCAAGCTTGCAGCATCGCGGATTCGAATTGCCCTGCGCAACCAGGCCACTATGGTGCAGAAGGCCAAGCGCCGGAGTACTGCCCCACTGCACAGCGA
Seq C2 exon
TCAGCAGCCAGTTCCTGAGCAGCTGAGGATCCAAGTGAGCAGGGTCAGCATGCACGACTACGAGGCTCTCCATTATGACAAGGAGCAGCTCAAGGAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-'40-48,'40-46,43-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=0.209 C2=0.257
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(23.4=100)
A:
PF0060914=DAGK_acc=PD(20.9=49.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTGTGCAGGCACCATGC
R:
AGGCCTCCTTGAGCTGCTC
Band lengths:
213-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]