DreEX0026698 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38825848-38828975:+
Coord C1 exon
chr7:38825848-38825959
Coord A exon
chr7:38826061-38826260
Coord C2 exon
chr7:38828875-38828975
Length
200 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTTTTGTGACTTTAGGCC
3' ss Score
6.37
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTACTGTGCGGGCACAATGCCATGGGGCAATCCGAGTGAGCATCATGACTTTGAGCCTCAGCGTCATGATGATGGCTGCATTGAGGTTATTGGATTCACAATGACATCACTG
Seq A exon
GCCACACTGCAGGTCGGAGGTCACGGTGAGAGGTTAAATCAGTGTCGCGAAGTCACCCTCACCACCTTTAAGTCAATCCCCATGCAGGTGGACGGGGAGCCTTGTAAACTAGCACCATCTGTTATTCACATTTCTTTGCGAAACCAGGCCAACATGGTGCAGAAAACCAAGAGACGTACATCTATACCACTGCTAAACGA
Seq C2 exon
TCAGCAACCGTTTCCAGAACGACTACGGATCAGAGTGAGCCGTATCAGCATGCATGATTATGAAGCTTTGCACTACGACAAGGAGAAGCTCAAAGAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439-'28-27,'28-25,29-27
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.149 C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(23.4=100)
A:
PF0060914=DAGK_acc=PD(20.9=49.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATCCGAGTGAGCATCAT
R:
AAGCTTCTTTGAGCTTCTCCTTGT
Band lengths:
188-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]