HsaEX7105887 @ hg38
Exon Skipping
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46374934-46375951:+
Coord C1 exon
chr11:46374934-46375045
Coord A exon
chr11:46375432-46375631
Coord C2 exon
chr11:46375851-46375951
Length
200 bp
Sequences
Splice sites
3' ss Seq
CAAGCTTCCTGTGCCCACAGGCC
3' ss Score
9.5
5' ss Seq
CGAGTACGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
GTACTGTGCGGGCACCATGCCCTGGGGCCACCCTGGGGAGCACCACGACTTTGAGCCCCAGCGGCATGACGACGGCTACCTCGAGGTCATTGGCTTCACCATGACGTCGTTG
Seq A exon
GCCGCGCTGCAGGTGGGCGGACACGGCGAGCGGCTGACGCAGTGTCGCGAGGTGGTGCTCACCACATCCAAGGCCATCCCGGTGCAGGTGGATGGCGAGCCCTGCAAGCTTGCAGCCTCACGCATCCGCATCGCCCTGCGCAACCAGGCCACCATGGTGCAGAAGGCCAAGCGGCGGAGCGCCGCCCCCCTGCACAGCGA
Seq C2 exon
CCAGCAGCCGGTGCCAGAGCAGTTGCGCATCCAGGTGAGTCGCGTCAGCATGCACGACTATGAGGCCCTGCACTACGACAAGGAGCAGCTCAAGGAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-'39-68,'39-65,47-68=AN
Average complexity
A_C2
Mappability confidence:
100%=90=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=0.195 C2=0.262
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(23.4=100)
A:
PF0060914=DAGK_acc=PD(20.9=49.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGAGCCTGTGTCCAAG
R:
TCACAGGCCTCCTTGAGCTG
Band lengths:
236-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains