GgaEX1019522 @ galGal3
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25816155-25817160:-
Coord C1 exon
chr5:25817049-25817160
Coord A exon
chr5:25816545-25816744
Coord C2 exon
chr5:25816155-25816255
Length
200 bp
Sequences
Splice sites
3' ss Seq
CACTCTGGACTCTTTCACAGGCT
3' ss Score
6.75
5' ss Seq
CGAGTAGGT
5' ss Score
5.76
Exon sequences
Seq C1 exon
ATACTGTGCAGGCACAATGCCCTGGGGCAACCCTGGAGAGCACCACGACTTCGAGCCGCAGCGCCATGATGATGGCTGCATTGAAGTCATTGGCTTCACCATGACATCCCTG
Seq A exon
GCTGCTTTGCAGGTGGGTGGCCACGGGGAGAGGCTGTGCCAGTGCCGGCAGGTGGTTCTCACCACGTCGAAGGCCATCCCCATGCAGGTAGATGGGGAGCCCTGCAAGCTGGCAGCTTCCTGCATCCACATCTCCCTGCGCAACCAAGCCAACATGGTGCAGAAGACCAAACGGCGCAACTCCATGCCTCTGCTCAACGA
Seq C2 exon
CCAGCAGCCAGTGCCTGAGCGGCTGCGAATCCGAGTGAGCCGAATCAGCATGCGCGACTACGAGGCACTGCACTATGACAAGGAAAAGCTGAAGGAAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.209 C2=0.086
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(23.4=100)
A:
PF0060914=DAGK_acc=PD(20.9=49.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACCCTGGAGAGCAC
R:
AGGCTTCCTTCAGCTTTTCCT
Band lengths:
188-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]