MmuEX0014456 @ mm9
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91777211-91778236:-
Coord C1 exon
chr2:91778125-91778236
Coord A exon
chr2:91777595-91777794
Coord C2 exon
chr2:91777211-91777311
Length
200 bp
Sequences
Splice sites
3' ss Seq
TGAGCATCCTATGCCCACAGGCA
3' ss Score
7.5
5' ss Seq
CGAGTAGGT
5' ss Score
5.76
Exon sequences
Seq C1 exon
GTACTGTGCAGGCACCATGCCCTGGGGCCACCCCGGGGAGCACCATGACTTCGAGCCCCAGAGGCATGATGATGGCTACCTGGAGGTCATCGGCTTCACCATGACATCCTTG
Seq A exon
GCAGCACTGCAGGTGGGTGGGCACGGCGAGCGATTGACGCAGTGCCGAGAAGTGCTGCTCACCACTGCCAAGGCCATCCCTGTGCAGGTGGACGGTGAGCCCTGCAAGCTTTCAGCATCACGGATTCGAATTGCCCTGCGCAACCAGGCCACTATGGTGCAGAAGGCCAAGCGCCGGAGTACTGCCCCACTGCACAGCGA
Seq C2 exon
CCAGCAGCCAGTTCCTGAGCAGCTGAGGATCCAGGTGAGCAGGGTCAGTATGCACGACTACGAGGCTCTACATTATGACAAGGAGCAGCTCAAGGAAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-'27-40,'27-38,29-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=0.209 C2=0.257
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(23.4=100)
A:
PF0060914=DAGK_acc=PD(20.9=49.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTGTGCAGGCACCATGC
R:
GGCTTCCTTGAGCTGCTCCTT
Band lengths:
212-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: