DreEX6100908 @ danRer10
Exon Skipping
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7717612-7720448:+
Coord C1 exon
chr25:7717612-7717723
Coord A exon
chr25:7717875-7718074
Coord C2 exon
chr25:7720348-7720448
Length
200 bp
Sequences
Splice sites
3' ss Seq
TTGCTGGCATCTTTCTGTAGGCA
3' ss Score
7.88
5' ss Seq
TGAGTCAGT
5' ss Score
-2.15
Exon sequences
Seq C1 exon
ATATTGCGCTGGTACCATGCCATGGGGGAACCCAAGTGAGAACAATGACTTCGGGCCACAGAAACACGACGACGGGCTTATTGAGGTCATCGGCTTCACCATGACCTCTATG
Seq A exon
GCAACTCTTCAGGTTGGAGGACATGGCGAGAGGCTTCATCAGTGTAAGGAGGTGACCCTGACTACTTTTAAGCCCATTCCTGTACAGGTGGATGGGGAACCCTGTAGACTGGCTCCATCCGTCATACACATCACTCGAAGGAACCAAGCCAACATGCTGCAGAAAACCAAGAGGAGGATCTCTCTACCACAACTGTATGA
Seq C2 exon
TCAGCAGCCCATCGCAGAGACAGTGCAGATCCAAGTGAACCGTATCAGTATGCATGATTATGAAGCTCTCCATTATGATAAGGAGCAGCTCAAAGAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025-'20-27,'20-26,22-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.075 C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(23.4=100)
A:
PF0060914=DAGK_acc=PD(20.9=49.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTGCGCTGGTACCATGCC
R:
GGCTTCTTTGAGCTGCTCCTT
Band lengths:
212-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]