RnoEX6020198 @ rn6
Exon Skipping
Gene
ENSRNOG00000012750 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:RGD Symbol;Acc:1563142]
Coordinates
chr3:160423132-160430580:+
Coord C1 exon
chr3:160423132-160423269
Coord A exon
chr3:160425267-160425362
Coord C2 exon
chr3:160430332-160430580
Length
96 bp
Sequences
Splice sites
3' ss Seq
AGCAGTGTCTCCTCTTTCAGGGT
3' ss Score
9.12
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCTGTGGACCACATGAATGGGAAGGAGGTGAGCGGGCAGCTGCTCTATGTGGGCCGGGCCCAGAAGCGGGCAGAGCGGCAGAACGAGCTGAAGCGCAGATTTGAACAAATGAAGCAGGAGAGGCAGAACCGCTACCAG
Seq A exon
GGTGTGAACCTTTATGTGAAGAACCTGGATGACTCCATTAATGATGATAGGCTGAAGGAAGTTTTTTCTACCTATGGAGTGATCACCAGCGCTAAG
Seq C2 exon
GTGATGACAGAAAGTAGCCACAGCAAGGGCTTTGGCTTTGTGTGCTTTTCCTCTCCAGAAGAGGCAACGAAGGCTGTGACAGAGATGAACGGGCGCATCGTGGGTACGAAACCACTGTATGTGGCCCTGGCACAGCGCAAGGAGGAGCGGAAGGCCATCTTGACCAACCAGTATAGGAGACGCCTCTCTCGCTCTGTCTTGAGCTCCTTCCAGCAGCCTACCAGCTACCTGCTCCCTGCTGTACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012750-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=0.000 C2=0.108
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(21.4=32.6)
A:
PF0007617=RRM_1=PU(40.6=87.5)
C2:
PF0007617=RRM_1=PD(56.5=47.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGACCACATGAATGGG
R:
CACACAAAGCCAAAGCCCTTG
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]