BtaEX0025676 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016849 | PABPC1L
Description
poly(A) binding protein, cytoplasmic 1-like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr13:74045913-74060687:+
Coord C1 exon
chr13:74045913-74046106
Coord A exon
chr13:74055918-74056013
Coord C2 exon
chr13:74060421-74060687
Length
96 bp
Sequences
Splice sites
3' ss Seq
AGGTATCCTTTTCCTTCTAGGGC
3' ss Score
9.24
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
CGGAGCGGGCACTGGACACCATGAACTTTGAGGTGATCAAAGGCCAGCCCATCCGCATCATGTGGTCCCAGCGAGACCCAGGACTTCGTAAGTCAGGTGTGGGCAACATCTTCATCAAGAACCTGGAGGACTCCATTGATAACAAGGCCTTGTACGACACCTTCTCCACCTTTGGGAACATCCTGTCTTGTAAG
Seq A exon
GGCGTGAACTTGTATGTGAAGAACCTGGATGACTCCATAGATGATGAGAAACTGAGGAAAGAGTTCTCTCCCTATGGAGTGATCACCAGTGCCAAG
Seq C2 exon
GTGATGACAGAGGGTGGCCACAGCAAAGGGTTTGGCTTTGTGTGTTTTTCCTCTCCAGAAGAGGCGACCAAGGCCGTGACAGAGATGAACGGGCGCATCGTGGGCACCAAGCCACTGTACGTGGCGCTGGCCCAGCGCAAGGAAGAGCGGAAGGCCATCCTGACCAACCAGTACATGCAGCGCCTCTCCACCATGCGGGCCCTGGGTGGCCCCATCCTGGGCTCCTTCCAGCAGCCTGCCAGCTACTTCCTGCCCGCTGTGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016849_MULTIEX1-5/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.090
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.4=27.7),PF0007617=RRM_1=PU(40.6=43.1)
A:
PF0007617=RRM_1=PU(40.6=87.5)
C2:
PF0007617=RRM_1=PD(56.5=43.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTAAGTCAGGTGTGGGC
R:
CTTGGTCGCCTCTTCTGGAGA
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development