GgaEX0005509 @ galGal3
Exon Skipping
Gene
ENSGALG00000004123 | PABPC1L
Description
NA
Coordinates
chr20:5199708-5201242:-
Coord C1 exon
chr20:5201105-5201242
Coord A exon
chr20:5200585-5200680
Coord C2 exon
chr20:5199708-5199974
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCTGCCCCTTTGCAGGGC
3' ss Score
11.17
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCCGTGGCTGACATGAACGGAAAGGAGATCAACGGGCGGATGGTGTACGTGGGCCGGGCGCAGAAGCGGCTGGAGAGGCAGAGTGAGCTGAAAAGGAAATTTGAGCAGATGAAGCAGGAGCGAGTGAGCAGGTACCAG
Seq A exon
GGCGTCAACCTGTATGTGAAGAACCTGGATGACGGGATAGATGATGAGCGGCTGAGGAAGGAATTCTCTCCTTATGGCACCATCACCAGTGCCAAG
Seq C2 exon
GTGATGACAGAGGGTGGCCACAGCAAAGGGTTTGGCTTTGTATGTTTTTCCTCTCCAGAAGAGGCTACCAAGGCCGTGACCGAAATGAACGGACGGATTGTTAGCACTAAGCCTCTCTACGTTGCGCTCGCGCAAAGGAAAGAGGAAAGGAAAGCAATTCTCACCAACCAGTACATGCAGCGATTGGCCACCATGAGGGCACTGCCTGGCCCTTTCCTTGGCTCCTTCCAGCCTCCCCCGGGGTATTTCCTCCCCCCCATCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004123-'5-6,'5-5,6-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.000 C2=0.090
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(21.4=32.6),PF073187=DUF1464=FE(45.0=100)
A:
PF073187=DUF1464=PD(12.0=37.5),PF0007617=RRM_1=PU(40.6=87.5)
C2:
PF0007617=RRM_1=PD(56.5=43.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGACATGAACGGAAAGG
R:
AAAGCCAAACCCTTTGCTGTG
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]