RnoEX6026152 @ rn6
Exon Skipping
Gene
ENSRNOG00000002974 | Cdx4
Description
caudal type homeo box 4 [Source:RGD Symbol;Acc:1561529]
Coordinates
chrX:74165187-74173347:+
Coord C1 exon
chrX:74165187-74165855
Coord A exon
chrX:74171735-74171880
Coord C2 exon
chrX:74172974-74173347
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATGTCATGCTTCTCCAACAGGGA
3' ss Score
9.33
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
CCTTTTAGAAAAAGAAGCGGGAATGTACCCAGGCACTCTCAGGAACCCTGGAGGAGGCAGCACAGCCGGAGTGGGCACCTCTGGGGGCAGTGGTAGTCCTCTGCCTGCCTCCAACTTTACTGCAGCCCCAGTTTACCCACACTACATGGGGTATCCACATATGTCCAACATGGATCCTCACGGGCCTTCGCTGGGAGCCTGGAGCTCACCCTACAGTCCGCCCCGGGAAGACTGGAGTACATACCCTGGGCCGTCCAGCACAATGGGCACAGTGCCCATGAACGACATGACCTCGAGCTCCCCAGCTTTCGGCTCCCCAGACTACAGCACTCTGGGCCCCACTGGCGGTGCAGGCGGTGCAAGCAACGGCGGTAGCCTGCCAGACGCGGCCAGCGAGTCACTGGTTTCCATCGACTCAGGCACCTCTGGCGGCGCCACTTCTCCCAGCAGGAGCCGCCACAGCCCCTACGCGTGGATGCGCAAGACTGTGCAGGTGACCG
Seq A exon
GGAAAACCAGGACAAAAGAAAAGTATCGTGTGGTCTACACGGATCATCAAAGGCTGGAGCTGGAAAAGGAATTTCACTGCAATAGATACATTACCATCCGGAGGAAGTCAGAGCTGGCAGTTAACCTGGGCCTTTCTGAGAGACAG
Seq C2 exon
GTGAAAATCTGGTTTCAGAATCGCAGAGCCAAGGAGAGGAAGATGATCAAAAAGAAAATCTCCCAGTTTGAGAACAGTGGAGGTTCCGTGCAAAGTGACTCTGGCTCCATCAGCCCCGGAGAACTGCCTAATGCTTTCTTCACCACTCCATCTGCTGTCCGTGGGTTTCAGCCAATTGAGATACAGCAGGTCATAATTTCTGAATGAAACGGGAGCAGAGAAACCAACGCATCCTTCCTGTTACAGTGTCTCTTTGGCCTCTAAGATAACAGCAGGGCAGTTGAGATCGGATATACTTCCTTATAAGGCACAATTCCAAACAAGTAGACACACCATGAGTTGGAGATATTTCAGAAGACTCTAATATTAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002974-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=0.122 C2=0.309
Domain overlap (PFAM):
C1:
PF047317=Caudal_act=PU(97.5=92.4)
A:
PF047317=Caudal_act=PD(1.8=6.1),PF0004624=Homeobox=PU(73.7=85.7)
C2:
PF0004624=Homeobox=PD(22.8=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGACATGACCTCGAGCTC
R:
GGCTCTGCGATTCTGAAACCA
Band lengths:
251-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]