MmuEX6045547 @ mm9
Exon Skipping
Gene
ENSMUSG00000031326 | Cdx4
Description
caudal type homeobox 4 [Source:MGI Symbol;Acc:MGI:88362]
Coordinates
chrX:100516737-100525931:+
Coord C1 exon
chrX:100516737-100517394
Coord A exon
chrX:100523348-100523493
Coord C2 exon
chrX:100524773-100525931
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATCTTATGCTTTCTCAACAGGGA
3' ss Score
10.65
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
CACCATGTATGGAAGCTGCCTTTTAGAAAAAGAAGCGGGCATGTACCCAGGCACTCTCAGGAGCCCTGGAGGAAGCAGTACAGCCGGAGTGGGCACCTCTGGGGGCAGTGGTAGTCCTCTGCCTGCCTCCAACTTTACTGCAGCCCCAGTTTACCCACACTACGTGGGTTACCCTCATATGTCCAACATGGATCCTCACGGGCCTTCGCTGGGAGCCTGGAGCTCACCCTACAGTCCGCCCCGGGAAGACTGGAGTACATACCCTGGGCCGCCCAGTACAATGGGCACAGTGCCCATGAATGACATGACCTCCCCAGTTTTCGGATCCCCAGACTACAGCACTCTGGGCCCCACCAGCGGTGCAAGCAACGGCGGTAGCTTGCCAGACGCGGCCAGCGAGTCACTGGTTTCTCTTGACTCCGGCACCTCAGGCGCCACTTCTCCCAGCAGGAGCCGTCACAGCCCCTACGCATGGATGCGCAAAACTGTGCAGGTGACGG
Seq A exon
GGAAAACCAGGACAAAAGAAAAGTATCGTGTGGTCTACACAGATCATCAACGGCTGGAGCTGGAAAAGGAATTTCACTGCAATAGATACATCACCATCAGGAGGAAGTCAGAGCTGGCAGTTAACCTGGGCCTTTCTGAGAGACAG
Seq C2 exon
GTGAAAATCTGGTTTCAGAATCGCAGAGCCAAGGAGAGGAAGATGATAAAAAAGAAAATCTCCCAGTTTGAGAACACTGGAGGTTCCGTGCAAAGTGACTCTGGCTCCATCAGCCCCGGAGAACTGCCTAACGCTTTCTTCACCACTCCATCTGCTGTCCGTGGATTTCAGCCAATCGAGATACAGCAGGTCATAGTTTCTGAATGAAACAGGAGCAGAGAAACGGAAGCATCCTTCCTGTTACAGTGTCTCTTTGGCCTCTAAGCTAACAGCAGGGCAGTTGAGATTGGATATAATTCCTTACAAGACACAATTCCAAACAAGTAGACACACGATGAGTTGGAGATATTTCAGAAGACTCTAATATTCAGAAACCATCCCCAGACCACTCTTATTCCATGCTGTCATATGGGGGCTGGGCAAAAAGCTGTGTGAAAAGCTTTGCTCCTTAAAGTCTAGACTCAAGAGCCCTTGAAACTTTGTTCACAATTTCAGAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031326-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.807 A=0.122 C2=0.309
Domain overlap (PFAM):
C1:
PF047317=Caudal_act=PU(97.5=92.2)
A:
PF047317=Caudal_act=PD(1.9=6.1),PF0004624=Homeobox=PU(73.7=85.7)
C2:
PF0004624=Homeobox=PD(22.8=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGTGCCCATGAATGACA
R:
GGCTCTGCGATTCTGAAACCA
Band lengths:
246-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: