GgaEX1014465 @ galGal4
Exon Skipping
Gene
ENSGALG00000007657 | CDXB
Description
caudal type homeobox 4 [Source:RefSeq peptide;Acc:NP_989945]
Coordinates
chr4:12065414-12074015:+
Coord C1 exon
chr4:12065414-12065936
Coord A exon
chr4:12070610-12070755
Coord C2 exon
chr4:12073242-12074015
Length
146 bp
Sequences
Splice sites
3' ss Seq
AACATTTCTTTCTCGAACAGGTA
3' ss Score
9.76
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GCAGCAAAAGAAAATACAGAAGAGCAAGATGTTGTGACAACGTTTACAATCTGCAAGCATCATGTATGTGAGCTCTCTCTTGGATAAAGAGACCAGCATGTATCCAGGACCTGCAAGGTGCAGCAACAACAACCTGCCAGTGCAGAACTTTGTGCCTGCTCCCCCCTACTCAGACTACATGGGGTATCACCACGTGCCAGCTCCAGACAGCCACGGACAGCCCGCGGGAGCCTGGGGACCCCACTACGGCCCCCAGAGGGAGGACTGGAACGCTTACGGCCCGTGCCCAGGGCCCTCCGGCACGGCTGCTGCCGCACAGCTCAGCGGCTCCTCTCCTGGGCAGGGCTCCTACAGTCCAGCTGAGTACAGCTCCCTCCATCCCGCTGCACCCGGGGGGTTACCTCCTGCAGGCACCGTTGGCACACAGCAGGTCTCACCCACCAACCAAAGGCACAGCTCTTACGAATGGATGAGGAAAACGGTGCCAACTAACACTACTG
Seq A exon
GTAAAACAAGAACAAAAGAGAAGTACCGGGTTGTTTACACAGACCATCAGAGACTAGAATTAGAGAAGGAATTTCACTGCAACAGATACATTACAATAAGGAGAAAGTCAGAACTTGCAGCAAACCTTGGACTATCTGAAAGACAG
Seq C2 exon
GTAAAAATCTGGTTCCAGAATCGCCGAGCCAAAGAAAGAAAAATAATCAAGAAGAAAATCTCTCAGTTTGATGGCAGTGGGGGCTCAGTTCAGAGTGACTCTGGTTCACTCAGCCCTAATGAAATAACAAGTTCCCTGTTCCCACCACCACACGGAATAAATGTATTACAGTCTGCTGACATCCATCAGGTCATAGTTTCAGAATGAACAGTGGGGGAAAAAGAAAAACAGAAAAAAGAGTTGTATGGATTTTTTGTTTTTGTTTTTAACTCCCTCTATTGAAAACTCAATTTTGCAAAGCACCATTCTTGTTTAACTACCTTCAGAGTACTTATTTCTACATAGAGGATCTGGAACTATTACCAAAATATTTCAATTAAAGAAATCTCAGGGAGTTCGTGCTGCTGCTAATACTCATCACTCAAAATCTTTTGAATAGAAGATAATTTACATCAGATACCGAAGCAGAAAAAGATACTGCTGAAGATTCAAGCAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007657_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=0.245 C2=0.353
Domain overlap (PFAM):
C1:
PF047317=Caudal_act=PU(98.5=91.2)
A:
PF047317=Caudal_act=PD(0.7=2.0),PF0004624=Homeobox=PU(73.7=85.7)
C2:
PF0004624=Homeobox=PD(22.8=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTACAGCTCCCTCCATCC
R:
GGCTGAGTGAACCAGAGTCAC
Band lengths:
255-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]