HsaEX6052342 @ hg38
Exon Skipping
Gene
ENSG00000131264 | CDX4
Description
caudal type homeobox 4 [Source:HGNC Symbol;Acc:HGNC:1808]
Coordinates
chrX:73447254-73455245:+
Coord C1 exon
chrX:73447254-73447755
Coord A exon
chrX:73453517-73453662
Coord C2 exon
chrX:73454379-73455245
Length
146 bp
Sequences
Splice sites
3' ss Seq
AATGCTTTCTCTCCTAACAGGGA
3' ss Score
11.68
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTACGGAAGCTGTCTTTTGGAGAAAGAAGCAGGCATGTACCCGGGCACTCTCATGAGCCCTGGGGGCGACGGCACAGCTGGGACAGGCGGCACAGGGGGCGGTGGGAGTCCGATGCCAGCCTCCAATTTCGCTGCGGCACCGGCTTTCTCGCACTATATGGGGTATCCTCATATGCCCAGCATGGATCCTCACTGGCCGTCTCTGGGAGTCTGGGGCTCACCCTACAGTCCCCCGCGAGAAGACTGGAGCGTGTATCCTGGGCCGTCTAGTACAATGGGCACAGTGCCGGTGAACGACGTGACCTCTAGCCCCGCCGCTTTCTGCTCGACCGACTACAGCAACTTGGGCCCTGTGGGCGGTGGAACTAGCGGCAGCAGCCTACCAGGCCAGGCTGGCGGGTCGCTTGTCCCGACGGACGCAGGCGCCGCCAAGGCCAGTTCCCCCAGCAGGAGCCGCCACAGCCCCTATGCATGGATGCGCAAGACGGTGCAGGTGACGG
Seq A exon
GGAAAACCAGGACAAAAGAAAAGTATCGTGTAGTTTACACTGATCATCAAAGATTGGAGCTGGAAAAGGAATTCCATTGCAATAGATATATCACCATCCAGAGAAAATCAGAGCTGGCAGTTAACCTGGGCCTTTCCGAGAGACAG
Seq C2 exon
GTGAAAATCTGGTTTCAGAATCGCAGAGCCAAGGAGAGAAAGATGATCAAAAAGAAAATCTCCCAGTTTGAGAATAGTGGAGGCTCGGTGCAAAGTGACTCTGACTCCATCAGCCCTGGGGAACTACCTAACACTTTTTTCACCACACCATCTGCTGTTCGTGGATTTCAACCTATTGAGATACAGCAGGTTATAGTCTCCGAATGAAAGAAAGCAAAGAGAAATTTAAAGTGCCCTTTTTTTAGTGATGTCTTTTGGGTCTCTAAGCTATCTACAGGGGAGTTGGAGCAGGGTGTAATTCCCTGTAAGGCAGTATTTGGAACAGATGGATGCACAATGGGTTGAAGATAATTTAGGGGACTCTTACTTTTAGAAACTATCCCCAGAAAACTCCTGTCACGTGCTGTGCTATATGTCAGTCACTCAGGAATCTTAGTGGTAAGGTATATAATTAAAAGCTAGAATCACAGGCCCTTCCAACTCTGTTCACAATTTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131264-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.601 A=0.061 C2=0.324
Domain overlap (PFAM):
C1:
PF047317=Caudal_act=PU(97.5=92.3)
A:
PF047317=Caudal_act=PD(1.9=6.1),PF0004624=Homeobox=PU(73.7=85.7)
C2:
PF0004624=Homeobox=PD(22.8=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACGACGTGACCTCTAGC
R:
CTTTCTCTCCTTGGCTCTGCG
Band lengths:
253-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains