GgaEX1014465 @ galGal3
Exon Skipping
Gene
ENSGALG00000007657 | F1NHM4_CHICK
Description
NA
Coordinates
chr4:12198898-12208036:+
Coord C1 exon
chr4:12198898-12199420
Coord A exon
chr4:12204631-12204776
Coord C2 exon
chr4:12207263-12208036
Length
146 bp
Sequences
Splice sites
3' ss Seq
AACATTTCTTTCTCGAACAGGTA
3' ss Score
9.76
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GCAGCAAAAGAAAATACAGAAGAGCAAGATGTTGTGACAACGTTTACAATCTGCAAGCATCATGTATGTGAGCTCTCTCTTGGATAAAGAGACCAGCATGTATCCAGGACCTGCAAGGTGCAGCAACAACAACCTGCCAGTGCAGAACTTTGTGCCTGCTCCCCCCTACTCAGACTACATGGGGTATCACCACGTGCCAGCTCCAGACAGCCACGGACAGCCCGCGGGAGCCTGGGGACCCCACTACGGCCCCCAGAGGGAGGACTGGAACGCTTACGGCCCGTGCCCAGGGCCCTCCGGCACGGCTGCTGCCGCACAGCTCAGCGGCTCCTCTCCTGGGCAGGGCTCCTACAGTCCAGCTGAGTACAGCTCCCTCCATCCCGCTGCACCCGGGGGGTTACCTCCTGCAGGCACCGTTGGCACACAGCAGGTCTCACCCACCAACCAAAGGCACAGCTCTTACGAATGGATGAGGAAAACGGTGCCAACTAACACTACTG
Seq A exon
GTAAAACAAGAACAAAAGAGAAGTACCGGGTTGTTTACACAGACCATCAGAGACTAGAATTAGAGAAGGAATTTCACTGCAACAGATACATTACAATAAGGAGAAAGTCAGAACTTGCAGCAAACCTTGGACTATCTGAAAGACAG
Seq C2 exon
GTAAAAATCTGGTTCCAGAATCGCCGAGCCAAAGAAAGAAAAATAATCAAGAAGAAAATCTCTCAGTTTGATGGCAGTGGGGGCTCAGTTCAGAGTGACTCTGGTTCACTCAGCCCTAATGAAATAACAAGTTCCCTGTTCCCACCACCACACGGAATAAATGTATTACAGTCTGCTGACATCCATCAGGTCATAGTTTCAGAATGAACAGTGGGGGAAAAAGAAAAACAGAAAAAAGAGTTGTATGGATTTTTTGTTTTTGTTTTTAACTCCCTCTATTGAAAACTCAATTTTGCAAAGCACCATTCTTGTTTAACTACCTTCAGAGTACTTATTTCTACATAGAGGATCTGGAACTATTACCAAAATATTTCAATTAAAGAAATCTCAGGGAGTTCGTGCTGCTGCTAATACTCATCACTCAAAATCTTTTGAATAGAAGATAATTTACATCAGATACCGAAGCAGAAAAAGATACTGCTGAAGATTCAAGCAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007657-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=0.220 C2=0.327
Domain overlap (PFAM):
C1:
PF047317=Caudal_act=PU(98.5=91.2)
A:
PF047317=Caudal_act=PD(0.7=2.0),PF0004624=Homeobox=PU(73.7=85.7)
C2:
PF0004624=Homeobox=PD(22.8=18.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTACAGCTCCCTCCATCC
R:
GGCTGAGTGAACCAGAGTCAC
Band lengths:
255-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]