RnoEX6029366 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108502614-108503366:-
Coord C1 exon
chr6:108503238-108503366
Coord A exon
chr6:108502875-108503012
Coord C2 exon
chr6:108502614-108502781
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTCTCACACCACAGATC
3' ss Score
9.59
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGCCGACGAGTGCATACTGTTTGGGCCTGCTCTCTGCCAGAATGGCCGATGCCTCAACACAGTGCCTGGCTACATTTGCCTGTGCAACCCTGGCTACCACTATGATGCCGTCAGCAGGAAGTGCCAGG
Seq A exon
ATCACAACGAATGCCAGGACTTGGCCTGTGAGAACGGCGAGTGTGTGAACACAGAAGGCTCCTTCCACTGCTTCTGCAGTCCCCCCCTCATCCTAGACCTCAGCGGACAGCGCTGTGTGAACAGTACCAGCAGCTCAG
Seq C2 exon
AGGACTTCCCTGACCATGACATCCACATGGACATCTGCTGGAAAAAAGTCACCAATGACGTGTGCAGCCAGCCCTTGCGTGGGCACCATACTACCTATACAGAGTGCTGCTGCCAAGACGGGGAGGCCTGGAGCCAGCAGTGTGCTCTGTGCCCCCCCAGGAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094-'45-38,'45-37,47-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=83.0)
C2:
PF0068312=TB=PU(86.0=64.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACGAGTGCATACTGTTT
R:
CTTGGCAGCAGCACTCTGTAT
Band lengths:
244-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]