MmuEX6082101 @ mm9
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:86126678-86127434:-
Coord C1 exon
chr12:86127306-86127434
Coord A exon
chr12:86126924-86127061
Coord C2 exon
chr12:86126678-86126845
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTCCTCACACCACAGATC
3' ss Score
9.23
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATGCCGATGAATGTGTACTGTTTGGGCCTGCTCTCTGCCAGAATGGCCGATGCCTCAACATAGTGCCTGGCTACATTTGCCTGTGCAACCCTGGCTACCACTATGATGCCTCCAGCAGGAAGTGCCAGG
Seq A exon
ATCACAACGAATGCCAGGACTTGGCCTGTGAGAACGGTGAGTGTGTGAACACAGAAGGCTCCTTCCATTGCCTCTGCAATCCCCCCCTCACCCTAGACCTCAGTGGGCAGCGCTGTGTGAACAGCACCAGCAGCACGG
Seq C2 exon
AGGACTTCCCTGACCATGACATCCACATGGACATCTGCTGGAAAAAAGTCACCAATGATGTGTGCAGCCAGCCCTTGCGTGGGCACCATACCACCTATACAGAATGCTGCTGCCAAGATGGGGAGGCCTGGAGCCAGCAATGCGCTCTGTGCCCGCCCAGGAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-'38-37,'38-35,39-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=83.0)
C2:
PF0068312=TB=PU(86.0=64.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTGTTTGGGCCTGCTCTC
R:
CTCCAGGCCTCCCCATCTTG
Band lengths:
248-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: