GgaEX0015303 @ galGal4
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr5:37214879-37215676:-
Coord C1 exon
chr5:37215548-37215676
Coord A exon
chr5:37215206-37215346
Coord C2 exon
chr5:37214879-37215046
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCCATCCTGCACGTGGGCAGATC
3' ss Score
5.42
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACATGGATGAGTGCGAGACCTTCGGCTCCGAGTTCTGCCGCAATGGACAGTGTCTGAACACGGTGCCGGGCTACAAGTGCTTCTGCCGTACAGGCTACTTCTACGATGTCGGCAGGCTTGAATGCGTAG
Seq A exon
ATCAGGATGAGTGCCAGAACGAGGTGTACTGCATCAACGGCGAGTGCCTGAACACAGTCGGCTCCTACCACTGCTTCTGCAGCCTCCCGCTTGTGCTGGATGCCACTGGCAACCGCTGCGTGAACCTCTCTGGCAGGGCAG
Seq C2 exon
ATGCCCTGGAGGAGTATGAGATCCACCTGGATGTCTGCTGGCAAACTGTCTCTGACTACATCTGCCAAGACCTGCTGCACGGCGAGCAGACCACCTACACTGAGTGCTGCTGCCGCCTTGGCGAAGCCTGGGGCCAGAATTGTGCGCTCTGTCCACACAGGTCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258-'48-52,'48-50,49-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5)
A:
PF0000822=EGF=WD(100=72.9)
C2:
PF0068312=TB=PU(86.0=64.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCAATGGACAGTGTCTGAA
R:
TGGACAGAGCGCACAATTCTG
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]