BtaEX6055056 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86190126-86190940:-
Coord C1 exon
chr10:86190812-86190940
Coord A exon
chr10:86190373-86190510
Coord C2 exon
chr10:86190126-86190293
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCCGTCTCCCTGCCTCCCAGATC
3' ss Score
10.04
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
ATGCCGACGAGTGTGTGATGTTCGGGCCCGGGCTCTGCCGGAACGGCCGGTGTCTCAACACGGTGCCTGGCTACATCTGCCTGTGCAACCCTGGCTACCACTACAATGCCGCCAGCAGGAAGTGTGAGG
Seq A exon
ATCACGACGAGTGCCAGGACATGGCCTGTGAGAATGGGGAGTGTGTGAACACGGAAGGCTCCTTCCACTGCTTCTGCAGCCCACCCCTCACCCTGGACCTCAGCCAGCAGCGCTGTGTGAACAGCACCAGTGGTGTGG
Seq C2 exon
AGGACCTGCCTGACCACGACATCCACATGGACATCTGCTGGAAGAGAGTCACCAATTACGTGTGCAGCCATCCCCTGCACGGCCGCCGCACCACCTACACCGAGTGCTGCTGTCAGGATGGCGAGGCCTGGAGCCAGCAGTGTGCTCTGTGCCCCCCCAGGAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957-'39-39,'39-38,41-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=83.0)
C2:
PF0068312=TB=PU(86.0=64.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAGTGTGTGATGTTCGGG
R:
CATCCTGACAGCAGCACTCG
Band lengths:
244-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]