RnoEX6030449 @ rn6
Exon Skipping
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11679721-11680851:-
Coord C1 exon
chr7:11680680-11680851
Coord A exon
chr7:11679941-11680203
Coord C2 exon
chr7:11679721-11679857
Length
263 bp
Sequences
Splice sites
3' ss Seq
CACATACGCGCGCCCTGCAGCTA
3' ss Score
6.15
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
ACTGCGGCCTGGCACCCCCAGGGGCCCTGACCCGGATAGTGGGCGGCAGCGCAGCCTCGCTTGGAGAATGGCCCTGGCAAGTGAGCCTGTGGCTGCGGCGCAGGGAGCACCGCTGTGGGGCGGTACTGGTGGCCGAGAGGTGGCTTCTGTCTGCAGCACACTGTTTCGACGT
Seq A exon
CTATGGGGACCCTATGCAGTGGGCAGCCTTCCTGGGGACCCCGTTCCTGAGCAGCACGGAGGGCCAGTTGGAGCGTGTGGCACGCATCTATCGCCACCCGTTCTACAACATCTACACGCTGGACTATGACGTGGCGCTGCTGGAGCTGGCGGGGCCTGTGCGCCGTAGCCGCTTGGTGCGACCCATCTGCCTACCAGGTCCCACTCGTCCTCCTGAAGGCGCGCGCTGTGTCATCACTGGCTGGGGTTCGCTGCGAGAAGGAG
Seq C2 exon
GCTCCATGGCGAGGCAGCTGCAGAAGGCTGCGGTGAGGGTCCTCAGTGAACAGACATGTCGCCGCTTCTACCCGGTACAGATCAGCAGTCGTATGTTGTGCGCAGGCTTCCCGCAGGGTGGCGTGGACAGCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.9=77.6)
A:
PF0008921=Trypsin=FE(38.9=100)
C2:
PF0008921=Trypsin=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGACCCGGATAGTGG
R:
GAGCAGCTGTCCACGCCA
Band lengths:
285-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]