BtaEX6039244 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22459215-22460564:-
Coord C1 exon
chr7:22460393-22460564
Coord A exon
chr7:22459473-22459738
Coord C2 exon
chr7:22459215-22459351
Length
266 bp
Sequences
Splice sites
3' ss Seq
CTATCCTTCACATCCCACAGCTA
3' ss Score
8.22
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACTGCGGCCTGGCGCCGGCTGCGGCGCTGACCCGGATCGTGGGCGGCAGCGCTGCGGGCCGCGGGGAGTGGCCGTGGCAGGTGAGCCTGTGGCTGCGGCGGCGGGAGCACCGCTGCGGGGCTGTGCTGGTGGCGGAGAGGTGGCTGCTATCGGCGGCACACTGCTTCGACGT
Seq A exon
CTACGGGGACCCCAAGCAGTGGGCAGCCTTCCTGGGCACGCCGTTCCTGAGTGGCGCTGATGGGCAGCTGGAGCGTGTGGCGCGCATCCACAAGCACCCCTTCTACAACCTCTACACGCTCGACTACGACGTGGCACTGCTCGAGCTGGTGGGGCCAGTACGCCGCAGCCGCCTGGTGCGGCCCATCTGCTTGCCTGAGCCCGCCCCACGGCCCCCCGACGGCGCGCGCTGCGTCATCACAGGCTGGGGCTCTGTGCGCGAGGGAG
Seq C2 exon
GCTCCATGGCCAGGCAGCTGCAGAAGGCGGCCGTGCGCCTCCTCAGCGAGCAGACCTGCCGCCGCTTCTACCCGGTACAGATCAGCAGCCGCATGCTGTGTGCCGGCTTCCCGCAGGGAGGCGTGGACAGCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718-'15-19,'15-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.8=77.6)
A:
PF0008921=Trypsin=FE(39.2=100)
C2:
PF0008921=Trypsin=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGACCCGGATCGTGG
R:
GAGCAGCTGTCCACGCCT
Band lengths:
284-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]