MmuEX0048184 @ mm9
Exon Skipping
Gene
ENSMUSG00000059406 | Tmprss9
Description
transmembrane protease, serine 9 [Source:MGI Symbol;Acc:MGI:3612246]
Coordinates
chr10:80359943-80361066:+
Coord C1 exon
chr10:80359943-80360114
Coord A exon
chr10:80360589-80360851
Coord C2 exon
chr10:80360930-80361066
Length
263 bp
Sequences
Splice sites
3' ss Seq
CACATACACGCACCCTGCAGCTA
3' ss Score
4.39
5' ss Seq
GAGGTATAC
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATTGTGGCCTGGCACCCCCCGGGGCCCTGACCCGGATAGTGGGCGGCAGCGCAGCCTCGCTTGGGGAGTGGCCCTGGCAAGTGAGCCTGTGGCTGCGGCGCAGGGAGCACCGATGTGGGGCGGTACTGGTGGCCGAGAGGTGGCTTCTGTCTGCAGCACACTGTTTCGACAT
Seq A exon
CTATGGGGACCCTATGCAGTGGGCGGCCTTCCTGGGCACCCCATTCCTGAGCAGCACGGAGGGCCAGTTGGAGCGCGTGGCACGCATCTATCGCCACCCGTTCTACAACATCTACACACTGGACTATGACGTGGCACTGCTGGAGCTGGCGGGACCCGTGCGCCGCAGCCGCTTGGTGCGACCCATCTGCCTACCAGGTCCCGCAAGGCCCCCTGACGGCGCTCGATGCGTCATCACCGGCTGGGGCTCGCTGCGCGAGGGAG
Seq C2 exon
GCTCCATGGCGCGGCAGCTGCAGAAGGCCGCAGTAAGGGTCCTCAGTGAACAGACATGTCGCCGCTTCTACCCAGTGCAGATCAGCAGCCGTATGTTGTGTGCAGGCTTCCCACAGGGTGGCGTGGACAGCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059406-'15-16,'15-15,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.9=77.6)
A:
PF0008921=Trypsin=FE(38.9=100)
C2:
PF0008921=Trypsin=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGGCCTGGCACCCC
R:
CTGTCCACGCCACCCTGT
Band lengths:
302-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: