HsaEX6091719 @ hg38
Exon Skipping
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr19:2424089-2425493:+
Coord C1 exon
chr19:2424089-2424257
Coord A exon
chr19:2425002-2425267
Coord C2 exon
chr19:2425357-2425493
Length
266 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCGCGCGCCCCGCAGCTA
3' ss Score
9.33
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
ACTGTGGCCTGGCGCCGGCCGCGCTCACCAGGATTGTGGGCGGCAGCGCAGCGGGCCGTGGGGAGTGGCCGTGGCAGGTGAGCCTGTGGCTGCGGCGCCGGGAACACCGTTGCGGGGCCGTGCTGGTGGCAGAGAGGTGGCTGCTGTCGGCGGCGCACTGCTTCGACGT
Seq A exon
CTACGGGGACCCCAAGCAGTGGGCGGCCTTCCTAGGCACGCCGTTCCTGAGCGGCGCGGAGGGGCAGCTGGAGCGCGTGGCGCGCATCTACAAGCACCCGTTCTACAATCTCTACACGCTCGACTACGACGTGGCGCTGCTGGAGCTGGCGGGGCCGGTGCGTCGCAGCCGCCTGGTGCGTCCCATCTGCCTGCCCGAGCCCGCGCCGCGACCCCCGGACGGCACGCGCTGCGTCATCACCGGCTGGGGCTCGGTGCGCGAAGGAG
Seq C2 exon
GCTCCATGGCGCGGCAGCTGCAGAAGGCGGCCGTGCGCCTCCTCAGCGAGCAGACCTGCCGCCGCTTCTACCCAGTGCAGATCAGCAGCCGCATGCTGTGTGCCGGCTTCCCGCAGGGTGGCGTGGACAGCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297-'28-29,'28-27,30-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.8=78.9)
A:
PF0008921=Trypsin=FE(39.2=100)
C2:
PF0008921=Trypsin=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCACCAGGATTGTGGG
R:
GAGCAGCTGTCCACGCCA
Band lengths:
284-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains