RnoEX6030728 @ rn6
Exon Skipping
Gene
ENSRNOG00000004346 | Notch3
Description
notch 3 [Source:RGD Symbol;Acc:620761]
Coordinates
chr7:14159951-14165917:-
Coord C1 exon
chr7:14165352-14165917
Coord A exon
chr7:14162194-14162526
Coord C2 exon
chr7:14159951-14160105
Length
333 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTCTCTGCCCCCCAGCCC
3' ss Score
9.15
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATCCCATGCCAGCAGACAGCCCGTGGGCCGCGCTGTGCTTGTCCTCCCGGGCTGTCTGGGCCCTCCTGCCGGGTTTCTAGGGCGTCACCCTCTGGAGCTACTAACACCAGCTGCGCTGCTACTCCTTGTCTGCATGGGGGCTCCTGCCTACCTGTACAGAGTGTCCCTTTCTTCCGCTGTGTATGCGCTCCGGGCTGGGGTGGCCCGCGTTGCGAGACCCCTTCCGCAGCCCCTGAGGTCCCTGAGGAGCCACGGTGCCCGCGAGCCGCCTGTCAGGCCAAGCGAGGGGACCAGAACTGCGACCGTGAGTGCAACAGCCCAGGCTGTGGCTGGGACGGCGGTGACTGCTCGCTGAATGTGGACGACCCCTGGAGGCAGTGTGAGGCACTGCAGTGCTGGCGTCTCTTCAACAACAGCCGGTGCGATCCAGCCTGCAGCTCTCCTGCCTGCCTCTATGACAACTTTGACTGCTACTCTGGTGGCCGCGACCGCACCTGCAA
Seq A exon
CCCGGTTTATAAGAAGTACTGCGCCGACCACTTTGCAGATGGCCGTTGTGACCAGGGCTGTAACACCGAGGAGTGTGGCTGGGATGGGCTGGACTGTGCCAGTGAGGTCCCGGCCCTTTTGGCCCGGGGGGTTCTGGTCCTCACAGTTCTTCTGCCTCCTGAAGAGTTGCTTCGCTCTAGTGCCGACTTCCTGCAGCGACTCAGCGCTATTCTGCGCACCTCGCTGCGCTTCCGCCTGGATGCACGTGGCCAAGCCATGGTCTTTCCCTACCACCGGCCAAGTCCTGGCTCCGAATCCCGGGTTCGTCGTGAGCTTGGCCCAGAGGTGATCGG
Seq C2 exon
CTCTGTAGTGATGCTGGAGATTGACAACCGGCTCTGTCTGAAGTCAGCGGAGAACGACCACTGCTTCCCTGACGCCCAGAGTGCTGCCGACTACCTGGGAGCCTTGTCGGCAGTGGAGCGGCTTGATTTCCCATACCCACTACGGGATGTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004346-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(13.9=2.6),PF0000822=EGF=WD(100=17.5),PF0006612=Notch=WD(100=19.6),PF0006612=Notch=WD(100=19.6),PF0006612=Notch=PU(12.8=2.6)
A:
PF0006612=Notch=PD(84.6=29.5),PF068168=NOD=WD(100=50.9),PF076847=NODP=PU(4.6=2.7)
C2:
PF076847=NODP=FE(80.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACTGCGACCGTGAGTG
R:
GGTATGGGAAATCAAGCCGCT
Band lengths:
346-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]