BtaEX6037294 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043971 | NOTCH3
Description
notch 3 [Source:HGNC Symbol;Acc:HGNC:7883]
Coordinates
chr7:8949711-8955843:+
Coord C1 exon
chr7:8949711-8950297
Coord A exon
chr7:8951925-8952257
Coord C2 exon
chr7:8955689-8955843
Length
333 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTCCTCCTCCCCCAGCCC
3' ss Score
7.28
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CGTGGACCGCGCTGCGCCTGCCCCCCGGGGCTGTCGGGTCCCGCCTGCCGGGGCTCCCGGGGGCTGACCCCCGGGGCCGCCAATGCCAGCTGTGTGACCTCTCCCTGCCTCCACGGGGGCTCCTGCCGCCCGGAGCCGCTCGCGCCCTTCTTCCGCTGCGCTTGCGCGTCAGGCTGGGCCGGGCCCCGCTGTGAGGTGCCCGCGACGATGCCCGAGGTATCCGTGGCGATGCCCGAGGTCCCAGAGGAGCCGGCGTGCCCGAGAGCCGCCTGCGAGGCCAAGAGCGGTGACAAGAACTGCGACCGAGAGTGCAACAGCCCCGGCTGCGGCTGGGACGGCGGCGACTGCTCGCTGAGCGTGAGCGACCCCTGGCGGCAGTGCGCGGCGCTGCAGTGCTGGCTCCTGTTCAACAACAGCCGCTGCGACCCTGCCTGCAGTTCGCCCGCCTGCCTCTACGACAACTTCGACTGCCGCGCCGGCGGCCGCGAGCGCACCTGCAA
Seq A exon
CCCAGTGTATGAGAAGTACTGCGCAGACCACTTCGCTGACGGCCGCTGCGACCAGGGCTGCAACACGGAGGAGTGCGGCTGGGATGGCCTGGACTGTGCGGGTGAGGTGCCGGCCCTGCTGGCCCGAGGCGTCCTGGTGCTCACAGTGCTGCTGCCGCCGGAGGAGCTGCTGCGCTCCAGCGCCGACTTCCTGCAGCGGCTCAGCGGCATCCTGCGCACCTCGCTACGCTTCCGTCTGGACGAGAATGGCCAGGCCATGGTCTTCCCTTACCACCGGCCAGGGCCTGGCGCTGAATCCCGGAACCGGCGGGAGCTGGCCCCTGAGGTGATTGG
Seq C2 exon
CTCTGTAGTGATGCTGGAGATTGACAACCGTCTGTGCCTGCAGTCACCGGAGAACGACCACTGTTTCCCTGATGCTCAGAGCGCGGCGGACTATTTGGGAGCGTTGTCGGCGGTGGAGCGCCTCGACTTCCCCTACCCACTGCGGGCGGCGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043971-'28-31,'28-28,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=16.8),PF0006612=Notch=WD(100=18.9),PF0006612=Notch=WD(100=18.9),PF0006612=Notch=PU(15.0=3.1)
A:
PF0006612=Notch=PD(82.5=29.5),PF068168=NOD=WD(100=50.9),PF076847=NODP=PU(4.6=2.7)
C2:
PF076847=NODP=FE(80.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGAACTGCGACCGAGAG
R:
CAGTGGGTAGGGGAAGTCGAG
Band lengths:
354-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]