MmuEX6076744 @ mm10
Exon Skipping
Gene
ENSMUSG00000038146 | Notch3
Description
notch 3 [Source:MGI Symbol;Acc:MGI:99460]
Coordinates
chr17:32139645-32143809:-
Coord C1 exon
chr17:32143244-32143809
Coord A exon
chr17:32141217-32141549
Coord C2 exon
chr17:32139645-32139799
Length
333 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTCTCTGTCCCCAGCCC
3' ss Score
10.79
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATCCCATGCCAGCAGACAGCCCGTGGACCACGCTGCGCTTGTCCTCCGGGGCTGTCCGGGCCCTCCTGCCGGGTTTCTAGGGCGTCACCCTCAGGAGCTACTAACGCCAGCTGCGCCTCTGCCCCTTGTCTGCATGGGGGCTCATGCCTACCTGTACAGAGTGTCCCTTTCTTCCGCTGTGTGTGCGCTCCGGGCTGGGGCGGCCCGCGTTGTGAGACCCCTTCCGCAGCCCCTGAGGTCCCCGAGGAGCCACGGTGCCCGCGAGCGGCTTGCCAGGCCAAGCGAGGGGACCAGAACTGCGATCGTGAGTGCAACACCCCAGGCTGTGGCTGGGATGGCGGTGACTGCTCACTGAACGTGGACGACCCCTGGAGGCAGTGTGAGGCACTGCAGTGCTGGCGTCTCTTCAACAACAGCCGGTGTGACCCGGCCTGCAGCTCTCCAGCCTGCCTCTATGACAACTTTGACTGCTACTCTGGTGGCCGCGACCGCACCTGCAA
Seq A exon
CCCTGTTTATGAGAAGTACTGCGCCGACCACTTTGCAGATGGCCGTTGTGACCAGGGCTGCAACACTGAGGAATGCGGCTGGGATGGGCTGGACTGTGCCAGCGAGGTCCCGGCCCTTTTGGCCCGAGGGGTTCTGGTCCTCACAGTTCTTCTGCCTCCTGAAGAGTTGCTGCGCTCCAGTGCCGACTTTCTGCAGCGACTCAGCGCTATTCTGCGCACCTCACTGCGCTTCCGCTTGGACGCACGTGGCCAGGCCATGGTCTTCCCCTATCACCGGCCAAGCCCTGGCTCTGAATCCCGGGTCCGTCGTGAGCTGGGTCCTGAGGTGATCGG
Seq C2 exon
CTCTGTGGTGATGCTGGAGATTGACAACCGGCTCTGTCTGCAGTCAGCTGAGAATGACCACTGCTTCCCTGATGCCCAGAGTGCTGCTGACTACCTGGGAGCCTTGTCAGCAGTGGAGCGACTTGATTTCCCATACCCACTTCGGGATGTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038146-'39-43,'39-41,40-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(13.9=2.6),PF0000822=EGF=WD(100=17.5),PF0006612=Notch=WD(100=19.6),PF0006612=Notch=WD(100=19.6),PF0006612=Notch=PU(12.8=2.6)
A:
PF0006612=Notch=PD(84.6=29.5),PF068168=NOD=WD(100=50.9),PF076847=NODP=PU(4.6=2.7)
C2:
PF076847=NODP=FE(80.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGAACTGCGATCGTGAG
R:
TGGGAAATCAAGTCGCTCCAC
Band lengths:
345-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types