RnoEX6034118 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142453379-142457145:+
Coord C1 exon
chr7:142453379-142453540
Coord A exon
chr7:142454723-142454974
Coord C2 exon
chr7:142457077-142457145
Length
252 bp
Sequences
Splice sites
3' ss Seq
AGGTTACTGTCTCCCCACAGAAA
3' ss Score
10.29
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
CCAACGAGGGATGATCGAGGATGGTTCATTAGTCCCATCGGCCCCAATCCCTGGTGGACCGTGATAGCCGCGATTATCCCAGCTCTCCTGTGCACCATCTTGATATTCATGGACCAGCAGATCACCGCCGTCATCATTAACCGGAAGGAGCACAAGCTCAAG
Seq A exon
AAAGGCTGTGGCTACCATCTGGACCTGCTCGTGGTGGCCATCATGCTGGGGGTCTGCTCCCTCATGGGCCTGCCTTGGTTCGTGGCTGCGACCGTGCTGTCCATTACTCATGTGAATAGCCTCAAGCTGGAATCTGAATGCTCTGCTCCGGGGGAGCAGCCTAAGTTTCTGGGCATCCGAGAACAGAGAGTCACGGGCCTCATGATCTTTGTGCTGATGGGCTGCTCCGTCTTCATGACAGCGGTCTTAAAG
Seq C2 exon
TTTATCCCAATGCCAGTGCTCTACGGAGTTTTCCTCTACATGGGAGTCTCTTCTCTACAAGGAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879-'29-29,'29-27,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
PF0095516=HCO3_cotransp=FE(16.1=100)
C2:
PF0095516=HCO3_cotransp=FE(4.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGAGGGATGATCGAGGA
R:
GATTCCTTGTAGAGAAGAGACTCCC
Band lengths:
228-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]