RnoEX6034304 @ rn6
Exon Skipping
Gene
ENSRNOG00000012208 | Itgb7
Description
integrin subunit beta 7 [Source:RGD Symbol;Acc:2929]
Coordinates
chr7:143821750-143822986:-
Coord C1 exon
chr7:143822763-143822986
Coord A exon
chr7:143822102-143822321
Coord C2 exon
chr7:143821750-143821955
Length
220 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTGGCTCTTCTCTAGGCT
3' ss Score
8.64
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTGTGCCCCTGGCCGCCTTGGTCAGCTGTGTGAATGCTCTGAGGCTGACCTGTCCTCCCCAGATTTGGAATCTGGTTGCCGGGCCCCCAATGGGACAGGGCCCCTGTGCAGCGGGAAGGGTCGATGCCAATGTGGACGCTGCAGTTGCAGTGGACAGAGCTCTGGGCGTCTGTGCGAGTGTGATGATGCCAGCTGTGAGCGACACGAGGGCATCCTCTGTGGAG
Seq A exon
GCTTTGGCCACTGCCAGTGTGGAGTGTGTCACTGCCATGCCAACCGCACTGGCAGAGCATGTGAGTGCAGTGAGAGTGTGGACAGCTGCGTTAGTCCCGAAGGAGGGCTCTGCAGTGGGCATGGTGACTGCAAATGCAACCGTTGCCAGTGCCTGGATGGCTACTACGGGGCTCTGTGTGACCAGTGCCTAGGCTGCAAGTCACCATGTGAGCAATACAG
Seq C2 exon
GGACTGCGCGGAGTGTGGGGCGTTTGGTACGGGTCCCCTGGCAGCCAACTGCAGCGCGGCTTGTGCTGACGTGAATGTGACCTTGGCCTTGGCCCCCAATTTGGATGATGGTTGGTGCAAAGAGAGGACGCTAGACAACCAGCTGTTCTTCTTCCTGGTGGAGAATTCGGCCAGAGGGGTCATACTGAGAGTGAGACCCCAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012208-'15-13,'15-11,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=51.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATGCTCTGAGGCTGACC
R:
ACCATCATCCAAATTGGGGGC
Band lengths:
307-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]