RnoEX6034713 @ rn6
Exon Skipping
Gene
ENSRNOG00000025937 | Zfp26
Description
zinc finger protein 26 [Source:RGD Symbol;Acc:1565847]
Coordinates
chr8:21457148-21458379:-
Coord C1 exon
chr8:21458355-21458379
Coord A exon
chr8:21457849-21457931
Coord C2 exon
chr8:21457148-21457256
Length
83 bp
Sequences
Splice sites
3' ss Seq
GGATGCCTCTTTTTTTCCAGAGA
3' ss Score
7.02
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATGGACATTACTAGTTTGTCCTGTG
Seq A exon
AGAGTCTGTTCTCTGATGACCAAATCTGCAGTCAAGAAGAAGAGACAGAGGGAGAAAGCACGCTGGGAGAAGACTGTGATAAG
Seq C2 exon
GATGAGGCTGTGGATTGCGCTCAGGAAGAGTGGACCCTAAAGGATCCGACTCAGAGCAGCAGACCTGGTGATGTGGCAGTGGAGGACCACACAAACTTGGCCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025937-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.786 C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACATTACTAGTTTGTCCTGTG
R:
AGTGGCCAAGTTTGTGTGGTC
Band lengths:
129-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]