MmuEX6064150 @ mm10
Exon Skipping
Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20444259-20445897:-
Coord C1 exon
chr9:20445746-20445897
Coord A exon
chr9:20444894-20444985
Coord C2 exon
chr9:20444259-20444367
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTATTATTTTATTTTTCAAGAAA
3' ss Score
6.16
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAATTTAAGTCATCCAGATTAAGGAGAATGAATCTCGTCATTTTCCACTTTGATGCATAAGTTTCCCTGACGTGTCCTTGGAATCGCAGAAGAATTTGGTCACATATTTTACCATCAGACTAAAGAGATGGACTTGACTAGTTTGTCCTGTG
Seq A exon
AAAGTCTGCTTTCTGGTGACCAGAACTGCAGTCAAGGAGAAGAGACAGAGGGAGAAAGCATGCTGGCTGATTGCCTGAAAAACTGTAATAAG
Seq C2 exon
GATGAGGCTGTGGATTTCTCTGAAGAGGAGTGGACTACAAAGGCTCCAACTCAGAACAGCAAGCCTGGTGCTGTGGCGGTGGAGGAGCACACAAGCCTGGCCGCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108_MULTIEX1-3/8=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.476 C2=0.626
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PU(0.1=0.0)
C2:
PF0135222=KRAB=FE(94.7=100)
Main Skipping Isoform:
ENSMUST00000159569fB19861
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATAAGTTTCCCTGACGTGT
R:
CCAGGCTTGCTGTTCTGAGTT
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types