MmuEX6064150 @ mm9
Exon Skipping
Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20248703-20250341:-
Coord C1 exon
chr9:20250190-20250341
Coord A exon
chr9:20249338-20249429
Coord C2 exon
chr9:20248703-20248811
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTATTATTTTATTTTTCAAGAAA
3' ss Score
6.16
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAATTTAAGTCATCCAGATTAAGGAGAATGAATCTCGTCATTTTCCACTTTGATGCATAAGTTTCCCTGACGTGTCCTTGGAATCGCAGAAGAATTTGGTCACATATTTTACCATCAGACTAAAGAGATGGACTTGACTAGTTTGTCCTGTG
Seq A exon
AAAGTCTGCTTTCTGGTGACCAGAACTGCAGTCAAGGAGAAGAGACAGAGGGAGAAAGCATGCTGGCTGATTGCCTGAAAAACTGTAATAAG
Seq C2 exon
GATGAGGCTGTGGATTTCTCTGAAGAGGAGTGGACTACAAAGGCTCCAACTCAGAACAGCAAGCCTGGTGCTGTGGCGGTGGAGGAGCACACAAGCCTGGCCGCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108-'5-9,'5-6,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.403 C2=0.633
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PU(0.1=0.0)
C2:
PF0135222=KRAB=FE(94.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATAAGTTTCCCTGACGTGT
R:
CCAGGCTTGCTGTTCTGAGTT
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: