RnoEX6034718 @ rn6
Exon Skipping
Gene
ENSRNOG00000033624 | Zfp426
Description
zinc finger protein 426 [Source:RGD Symbol;Acc:1590942]
Coordinates
chr8:21477329-21481735:-
Coord C1 exon
chr8:21481642-21481735
Coord A exon
chr8:21480219-21480301
Coord C2 exon
chr8:21477329-21479642
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGTTTTCACTTCAGAAT
3' ss Score
10.82
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACCTTGTACACAGGATATCAGCTCATCAAACCCAGTGTGATCTCTTGGTTGGAACAAGAAGAGTTTAGTACAGGGCAGAAGATAGTTTTTCCAG
Seq A exon
AATGGAAAATACAGCTCGAGACCCAGTGTTCAGCATCCCAGCAGGAGCTTTTGAGGGGTAACATATCCAACGGGATGCAAACG
Seq C2 exon
CAGACAGGAAGTGACACAGGAAGGGGCCTCTGTGACGGGACACAATATGGAGACTTCTTCAGTGAACTCTCGCCCCTTAGGACGGTTATGAAAACTCGACCTGCACAGGATAATTATGATAGTAGTCAATGCAGGAAAGACTTTCTAATGCTTCAGAGGAAAAAGTGTGCTGGTGAGAAACTTTCTGAGTTCAATCAGAGTGAAGAAACCGGTGCGATCCCAGGTAAAGCTTATCAGAAAATGGCCACACAAGAGAAATGTTTTGAATGCAGTGACTGTGGGAAGTCCTTTATGAATCAGTCACATCTTCAGACACATCAGAGAACTCACAGTGGAGACAAACTTTATGAATTGAATGAGTGTGGGAGAAGTTTTATAAACTCAAGACTTGCTGTGCTTATAGAAACTCTCAATGCAAAGAAACCTCACAGATGTAAGGAGTGTGGGAAAGGCTACCGATACCCTGCGTATCTAAACATTCACATGCGAACCCACACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033624-'10-9,'10-8,11-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.076
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF0009621=zf-C2H2=WD(100=5.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTGTGATCTCTTGGTTGG
R:
CCTGTGCAGGTCGAGTTTTCA
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]