RnoEX6037308 @ rn6
Exon Skipping
Gene
ENSRNOG00000010663 | Col6a5
Description
collagen type VI alpha 5 chain [Source:RGD Symbol;Acc:1565804]
Coordinates
chr8:114572017-114575060:-
Coord C1 exon
chr8:114574998-114575060
Coord A exon
chr8:114573831-114573893
Coord C2 exon
chr8:114572017-114572079
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTTTTACTCTTTATTTCCAGGGT
3' ss Score
9.82
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGGTCAAGTGGAGATCGTGGCGGGAAAGGAGACAAAGGAAGTGAAGGGCTTCAGGGACCTCAG
Seq A exon
GGTTCTCCTGGGCCAGTAGGACCCAGAGGGGACATCGGAAGACCTGGATTTGGGGGGAGAAAG
Seq C2 exon
GGGGAACCTGGAGTTCCTGGAGGCCCAGGACCACTGGGGCCCCCTGGACATCGAGGAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010663-'27-22,'27-21,28-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.0=100)
A:
PF0139113=Collagen=FE(23.0=100)
C2:
PF0139113=Collagen=PD(6.9=28.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAAGTGGAGATCGTGGC
R:
TGTTCTCCTCGATGTCCAGGG
Band lengths:
124-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]