RnoEX6037338 @ rn6
Exon Skipping
Gene
ENSRNOG00000031782 | Col6a4
Description
collagen, type VI, alpha 4 [Source:RGD Symbol;Acc:1564060]
Coordinates
chr8:114697601-114701199:-
Coord C1 exon
chr8:114701137-114701199
Coord A exon
chr8:114699146-114699208
Coord C2 exon
chr8:114697601-114697636
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTTTGGTTTCTTCATTGTAGGGC
3' ss Score
9.75
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
GGAGAAGATGGTAATCCAGGCCGTGGAGGAGAGAAGGGGGCCAAGGGAATCCGAGGGAAGAGG
Seq A exon
GGCAGTTCTGGATTTCCTGGGTTTGCTGGAACTCCAGGTGACCAAGGCCCACCAGGAAAAATG
Seq C2 exon
GGCATCAAGGGCCCAAAAGGCTTGGCAGATAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031782-'28-32,'28-31,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.667
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.0=100)
A:
PF0139113=Collagen=FE(27.0=100)
C2:
PF0139113=Collagen=PD(13.5=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCGTGGAGGAGAGAAG
R:
CGTCCTATCTGCCAAGCCTTT
Band lengths:
83-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]